Now showing items 1-7 of 7

    • Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine. 

      Magbanua, Zenaida V.; Ozkan, Seval; Bartlett, Benjamin D.; Chouvarine, Philippe; Saski, Christopher A.; Liston, Aaron; Cronn, Richard C.; Nelson, C. Dana; Peterson, Daniel G. (Public Library of ScienceDepartment of Plant and Soil SciencesCollege of Agriculture and Life SciencesMississippi Genome Exploration Laboratory, 1/21/2011)
      Loblolly pine (LP; Pinus taeda L.) is the most economically important tree in the U.S. and a cornerstone species in southeastern forests. However, genomics research on LP and other conifers has lagged behind studies on ...
    • Evolution of genome size and complexity in Pinus. 

      Morse, Alison M.; Peterson, Daniel G.; Islam-Faridi, M. Nurul; Smith, Katherine E.; Magbanua, Zenaida V.; Garcia, Saul A.; Kubisiak, Thomas L.; Amerson, Henry V.; Carlson, John E.; Nelson, C. Dana; Davis, John M. (Public Library of ScienceDepartment of Plant and Soil SciencesCollege of Agriculture and Life Sciences, 2/5/2009)
      BACKGROUND: Genome evolution in the gymnosperm lineage of seed plants has given rise to many of the most complex and largest plant genomes, however the elements involved are poorly understood. METHODOLOGY/PRINCIPAL FINDINGS: ...
    • Implication of lateral genetic transfer in the emergence of Aeromonas hydrophila isolates of epidemic outbreaks in channel catfish. 

      Hossain, Mohammad J.; Waldbieser, Geoffrey C.; Sun, Dawei; Capps, Nancy K.; Hemstreet, William B.; Carlisle, Kristen; Griffin, Matt J.; Khoo, Lester; Goodwin, Andrew E.; Sonstegard, Tad S.; Schroeder, Steven; Hayden, Karl; Newton, Joseph C.; Terhune, Jeffery S.; Liles, Mark R. (Public Library of ScienceCollege of Veterinary Medicine, 11/20/2013)
      To investigate the molecular basis of the emergence of Aeromonas hydrophila responsible for an epidemic outbreak of motile aeromonad septicemia of catfish in the Southeastern United States, we sequenced 11 A. hydrophila ...
    • Proteome and membrane fatty acid analyses on Oligotropha carboxidovorans OM5 grown under chemolithoautotrophic and heterotrophic conditions. 

      Paul, Debarati; Kumar, Ranjit; Nanduri, Bindu; French, Todd; Pendarvis, Ken; Brown, Ashli; Lawrence, Mark L.; Burgess, Shane C. (Public Library of ScienceDepartment of Chemical EngineeringDepartment of Biochemistry and Molecular BiologyCollege of Veterinary MedicineJames Worth Bagley College of EngineeringCollege of Agriculture and Life SciencesLife Sciences and Biotechnology Institute, 2/28/2011)
      Oligotropha carboxidovorans OM5 T. (DSM 1227, ATCC 49405) is a chemolithoautotrophic bacterium able to utilize CO and H(2) to derive energy for fixation of CO(2). Thus, it is capable of growth using syngas, which is a ...
    • RNA-seq based transcriptional map of bovine respiratory disease pathogen "Histophilus somni 2336". 

      Kumar, Ranjit; Lawrence, Mark L.; Watt, James; Cooksey, Amanda M.; Burgess, Shane C.; Nanduri, Bindu (Public Library of ScienceCollege of Veterinary Medicine, 1/20/2012)
      Genome structural annotation, i.e., identification and demarcation of the boundaries for all the functional elements in a genome (e.g., genes, non-coding RNAs, proteins and regulatory elements), is a prerequisite for systems ...
    • Role of an iron-dependent transcriptional regulator in the pathogenesis and host response to infection with Streptococcus pneumoniae. 

      Gupta, Radha; Bhatty, Minny; Swiatlo, Edwin; Nanduri, Bindu (Public Library of ScienceDepartment of Basic SciencesCollege of Veterinary Medicine, 2/20/2013)
      Iron is a critical cofactor for many enzymes and is known to regulate gene expression in many bacterial pathogens. Streptococcus pneumoniae normally inhabits the upper respiratory mucosa but can also invade and replicate ...
    • Tricarboxylic acid cycle and one-carbon metabolism pathways are important in Edwardsiella ictaluri virulence. 

      Dahal, Neeti; Abdelhamed, Hossam; Lu, Jingjun; Karsi, Attila; Lawrence, Mark L. (Public Library of ScienceDepartment of Basic SciencesCollege of Veterinary Medicine, 6/7/2013)
      Edwardsiella ictaluri is a Gram-negative facultative intracellular pathogen causing enteric septicemia of channel catfish (ESC). The disease causes considerable economic losses in the commercial catfish industry in the ...