Recent Submissions

  • Stallion sperm transcriptome comprises functionally coherent coding and regulatory RNAs as revealed by microarray analysis and RNA-seq. 

    Das, Pranab J.; McCarthy, Fiona M.; Vishnoi, Monika; Paria, Nandina; Gresham, Cathy; Li, Gang; Kachroo, Priyanka; Sudderth, A. Kendrick; Teague, Sheila; Love, Charles C.; Varner, Dickson D.; Chowdhary, Bhanu P.; Raudsepp, Terje (Public Library of ScienceDepartment of Basic SciencesDepartment of Computer Sciences and EngineeringCollege of Veterinary MedicineJames Worth Bagley College of Engineering, 2/11/2013)
    Mature mammalian sperm contain a complex population of RNAs some of which might regulate spermatogenesis while others probably play a role in fertilization and early development. Due to this limited knowledge, the biological ...
  • Cross-Ontology multi-level association rule mining in the Gene Ontology. 

    Manda, Prashanti; Ozkan, Seval; Wang, Hui; McCarthy, Fiona M.; Bridges, Susan M. (Public Library of ScienceDepartment of Computer Sciences and EngineeringDepartment of Plant and Soil SciencesDepartment of Basic SciencesJames Worth Bagley College of EngineeringCollege of Agriculture and Life SciencesCollege of Veterinary MedicineInstitute for Genomics, Biocomputing and Biotechnology, 10/12/2012)
    The Gene Ontology (GO) has become the internationally accepted standard for representing function, process, and location aspects of gene products. The wealth of GO annotation data provides a valuable source of implicit ...
  • Comparison of four ChIP-Seq analytical algorithms using rice endosperm H3K27 trimethylation profiling data. 

    Malone, Brandon M.; Tan, Feng; Bridges, Susan M.; Peng, Zhaohua (Public Library of ScienceDepartment of Computer Sciences and EngineeringDepartment of Biochemistry and Molecular BiologyJames Worth Bagley College of EngineeringCollege of Agriculture and Life Sciences, 9/30/2011)
    Chromatin immunoprecipitation coupled with high throughput DNA Sequencing (ChIP-Seq) has emerged as a powerful tool for genome wide profiling of the binding sites of proteins associated with DNA such as histones and ...
  • Identification of maize genes associated with host plant resistance or susceptibility to Aspergillus flavus infection and aflatoxin accumulation. 

    Kelley, Rowena Y.; Williams, W. Paul; Mylroie, J. Erik; Boykin, Deborah L.; Harper, Jonathan W.; Windham, Gary L.; Ankala, Arunkanth; Shan, Xueyan (Public Library of ScienceDepartment of Biochemistry, Molecular Biology, Entomology, and Plant PathologyDepartment of Computer Sciences and EngineeringCollege of Agriculture and Life SciencesJames Worth Bagley College of EngineeringCorn Host Plant Resistance Research UnitAgricultural Research Service, 5/14/2012)
    BACKGROUND: Aspergillus flavus infection and aflatoxin contamination of maize pose negative impacts in agriculture and health. Commercial maize hybrids are generally susceptible to this fungus. Significant levels of host ...