• Cross-Ontology multi-level association rule mining in the Gene Ontology. 

      Manda, Prashanti; Ozkan, Seval; Wang, Hui; McCarthy, Fiona M.; Bridges, Susan M. (Public Library of ScienceDepartment of Computer Sciences and EngineeringDepartment of Plant and Soil SciencesDepartment of Basic SciencesJames Worth Bagley College of EngineeringCollege of Agriculture and Life SciencesCollege of Veterinary MedicineInstitute for Genomics, Biocomputing and Biotechnology, 10/12/2012)
      The Gene Ontology (GO) has become the internationally accepted standard for representing function, process, and location aspects of gene products. The wealth of GO annotation data provides a valuable source of implicit ...
    • Stallion sperm transcriptome comprises functionally coherent coding and regulatory RNAs as revealed by microarray analysis and RNA-seq. 

      Das, Pranab J.; McCarthy, Fiona M.; Vishnoi, Monika; Paria, Nandina; Gresham, Cathy; Li, Gang; Kachroo, Priyanka; Sudderth, A. Kendrick; Teague, Sheila; Love, Charles C.; Varner, Dickson D.; Chowdhary, Bhanu P.; Raudsepp, Terje (Public Library of ScienceDepartment of Basic SciencesDepartment of Computer Sciences and EngineeringCollege of Veterinary MedicineJames Worth Bagley College of Engineering, 2/11/2013)
      Mature mammalian sperm contain a complex population of RNAs some of which might regulate spermatogenesis while others probably play a role in fertilization and early development. Due to this limited knowledge, the biological ...