• Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC. 

      Jaratlerdsiri, Weerachai; Deakin, Janine; Godinez, Ricardo M.; Shan, Xueyan; Peterson, Daniel G.; Marthey, Sylvain; Lyons, Eric; McCarthy, Fiona M.; Isberg, Sally R.; Higgins, Damien P.; Chong, Amanda Y.; St. John, John; Glenn, Travis C.; Ray, David A.; Gongora, Jaime (Public Library of ScienceDepartment of Biochemistry, Molecular Biology, Entomology, and Plant PathologyCollege of Agriculture and Life SciencesInstitute for Genomics, Biocomputing and Biotechnology, 12/11/2014)
      The major histocompatibility complex (MHC) is a dynamic genome region with an essential role in the adaptive immunity of vertebrates, especially antigen presentation. The MHC is generally divided into subregions (classes ...
    • Cross-Ontology multi-level association rule mining in the Gene Ontology. 

      Manda, Prashanti; Ozkan, Seval; Wang, Hui; McCarthy, Fiona M.; Bridges, Susan M. (Public Library of ScienceDepartment of Computer Sciences and EngineeringDepartment of Plant and Soil SciencesDepartment of Basic SciencesJames Worth Bagley College of EngineeringCollege of Agriculture and Life SciencesCollege of Veterinary MedicineInstitute for Genomics, Biocomputing and Biotechnology, 10/12/2012)
      The Gene Ontology (GO) has become the internationally accepted standard for representing function, process, and location aspects of gene products. The wealth of GO annotation data provides a valuable source of implicit ...
    • De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum 

      Fox, Samuel E.; Geniza, Matthew; Hanumappa, Mamatha; Naithani, Sushma; Sullivan, Chris; Preece, Justin; Tiwari, Vijay K.; Elser, Justin; Leonard, Jeffrey M.; Sage, Abigail; Gresham, Cathy; Kerhornou, Arnaud; Bolser, Dan; McCarthy, Fiona M.; Kersey, Paul; Lazo, Gerard R.; Jaiswal, Pankaj (Public Library of ScienceInstitute for Genomics, Biocomputing and Biotechnology, 5/12/2014)
    • Global analysis of lysine acetylation suggests the involvement of protein acetylation in diverse biological processes in rice (Oryza sativa). 

      Nallamilli, Babi Ramesh Reddy; Edelmann, Mariola J.; Zhong, Xiaoxian; Tan, Feng; Mujahid, Hana; Zhang, Jian; Nanduri, Bindu; Peng, Zhaohua (Public Library of ScienceDepartment of Biochemistry and Molecular BiologyCollege of Agriculture and Life SciencesInstitute for Genomics, Biocomputing and Biotechnology, 2/20/2014)
      Lysine acetylation is a reversible, dynamic protein modification regulated by lysine acetyltransferases and deacetylases. Recent advances in high-throughput proteomics have greatly contributed to the success of global ...
    • Natural Variation in Fish Transcriptomes: Comparative Analysis of the Fathead Minnow (Pimephales promelas) and Zebrafish (Danio rerio). 

      Wang, Rong-Lin; Bencic, David C.; Garcia-Reyero, Natália; Perkins, Edward J.; Villeneuve, Daniel L.; Ankley, Gerald T.; Biales, Adam D. (Public Library of ScienceInstitute for Genomics, Biocomputing and Biotechnology, 12/10/2014)
      Fathead minnow and zebrafish are among the most intensively studied fish species in environmental toxicogenomics. To aid the assessment and interpretation of subtle transcriptomic effects from treatment conditions of ...
    • Transcriptome-Based Differentiation of Closely-Related Miscanthus Lines 

      Chouvarine, Philippe; Cooksey, Amanda M.; McCarthy, Fiona M.; Ray, David A.; Baldwin, Brian S.; Burgess, Shane C.; Peterson, Daniel G. (Public Library of ScienceDepartment of Biochemistry, Molecular Biology, Entomology, and Plant PathologyDepartment of Plant and Soil SciencesDepartment of Biological SciencesCollege of Veterinary MedicineCollege of Agriculture and Life SciencesCollege of Arts and SciencesInstitute for Genomics, Biocomputing and BiotechnologyBost Extension Center, 1/10/2012)